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| 2025 | back to top |
A new electoral bottom-up model of institutional governance
Carlos M. Garrido,
Francisco C. Santos,
Elias Fernández Domingos,
Ana M. Nunes,
Jorge M. Pacheco
Nature Scientific Reports 15 (2025) 3865
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| 2024 | back to top |
Co-evolution of risk and cooperation in climate policies under wealth inequality
JM Pacheco, FC Santos
PNAS nexus 3 (12), pgae550
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Evolution of a theory of mind
T Lenaerts, M Saponara, JM Pacheco, FC Santos
Iscience 27 (2)
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The art of compensation: How hybrid teams solve collective-risk dilemmas
I Terrucha, E Fernández Domingos, F C. Santos, P Simoens, T Lenaerts
Plos one 19 (2), e0297213
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Humans program artificial delegates to accurately solve collective-risk dilemmas, but lack precision
Ines Terrucha, Elias Fernandez Domingos, Remi Suchon, Francisco C Santos, Pieter Simoens, Tom Lenaerts
Machine Behavior Conference(Berlin) - Conference Abstract
e-link
Counterfactual Thinking in Stochastic Dynamics of Cooperation
AM Fernandes, FC Santos, A Paiva
ECAI 2024, 3493-3500
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Scalable Multi-Objective Reinforcement Learning with Fairness Guarantees using Lorenz Dominance
D Michailidis, W Röpke, DM Roijers, S Ghebreab, FP Santos
arXiv preprint arXiv:2411.18195
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Tackling school segregation with transportation network interventions: an agent-based modelling approach
D Michailidis, M Tasnim, S Ghebreab, FP Santos
Autonomous Agents and Multi-Agent Systems 38 (1), 22
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The impact of mobility costs on cooperation and welfare in spatial social dilemmas
J Bara, FP Santos, P Turrini
Nature Scientific Reports 14 (1), 10572
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Fairness and Cooperation between Independent Reinforcement Learners through Indirect Reciprocity
J Smit, FP Santos
Proceedings of the 23rd International Conference on Autonomous Agents and Multiagent Systems pp 2468-2470
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Prosocial preferences improve climate risk management in subsistence farming communities
N Choquette-Levy, M Wildemeersch, FP Santos, SA. Levin, M Oppenheimer EU Weber
Nature Sustainability 7 (3), 282-293
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Prosocial dynamics in multiagent systems
FP Santos
AI Magazine 45 (1), 131-138
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Artificial Agents Facilitate Human Cooperation Through Indirect Reciprocity
AS Pires, FP Santos
27th European Conference on Artificial Intelligence 392, 3228 - 3235
e-link
Power asymmetry destabilizes reciprocal cooperation in social dilemmas
M Colnaghi, FP Santos, PAM Van Lange, DP Balliet
bioRxiv, 2024.09. 02.610740
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Performative Prediction on Games and Mechanism Design
A Góis, M Mofakhami, FP Santos, S Lacoste-Julien, G Gidel
Agentic Markets Workshop at ICML 2024
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Learning Fair Cooperation in Mixed-Motive Games with Indirect Reciprocity
M Smit, FP Santos
IJCAI 2024
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| 2023 | back to top |
Does spending more always ensure higher cooperation? An analysis of institutional incentives on heterogeneous networks
T Cimpeanu, FC Santos, TA Han
Dynamic Games and Applications 13 (4), 1236-1255
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Emotion expression and cooperation under collective risks
CM de Melo, FC Santos, K Terada
Iscience 26 (11)
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The evolution herding mentality and cooperation
M Chica, W Rand, FC Santos
Iscience 26 (10)
e-link
EGTtools: Evolutionary Game Dynamics in Python
EF Domingos, FC Santos, T Lenaerts
iScience 26, 106419
e-link
Seeding leading cooperators and institutions in networked climate dilemmas
M Chica, FC Santos
Chaos, Solitons & Fractals 167, 112987
e-link
AI Modelling of Counterfactual Thinking for Judicial Reasoning and Governance of Law
LM Pereira, FC Santos, AB Lopes
Multidisciplinary Perspectives on Artificial Intelligence and the Law, 263–279
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Adaptations to infer fitness interdependence promote the evolution of cooperation
M Colnaghi, FP Santos, PAM Van Lange, D Balliet
Proceedings of the National Academy of Sciences 120 (50), e2312242120
e-link
How to break information cocoons
FP Santos
Nature Machine Intelligence 5 (12), 1338-1339
e-link
Rate-Induced Transitions in Networked Complex Adaptive Systems: Exploring Dynamics and Management Implications Across Ecological, Social, and Socioecological Systems
VV Vasconcelos, FD Marquitti, T Ong, LC McManus, M Aguiar, AB Campos,
PS Dutta, K Jovanelly, V Junquera, J Kong, EH. Krueger, SA. Levin, W Liao, M Lu, D Mittal, M Pascual,
FL Pinheiro, J Rocha, FP Santos, P Sloot, C Su, B Taylor, E Tekwa, S Terpstra, AR Tilman,
JR Watson, L Yang, S Yitbarek, Qi Zhan
arXiv preprint arXiv:2309.07449
e-link
Opposing Responses to Scarcity Emerge from Functionally Unique Sociality Drivers
AB Kao, AK Hund, FP Santos, JG Young, D Bhat, J Garland, RA Oomen, HF McCreery
The American Naturalist 202 (3), 302-321
e-link
On consensus and cooperation: Comment on" Reputation and reciprocity" by Xia et al.
FP Santos
Physics of Life Reviews 46, 187-189
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Balancing Fairness and Efficiency in Transport Network Design through Reinforcement Learning
D Michailidis, S Ghebreab, FP Santos
Proceedings of AAMAS 2023
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Opinion Dynamics in Populations of Converging and Polarizing Agents
A Toshniwal, FP Santos
Proceedings of AAMAS 2023
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The role of space, density and migration in social dilemmas
J Bara, FP Santos, P Turrini
Proceedings of AAMAS 2023
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Towards Reducing School Segregation by Intervening on Transportation Networks
D Michailidis, M Tasnim, S Ghebreab, FP Santos
International Conference on Autonomous Agents and Multiagent Systems, 217-227
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Dynamics of Cooperation and Conflict in Multiagent Systems
FP Santos
Proceedings of AAAI 2023
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Learning Fair Cooperation in Systems of Indirect Reciprocity
J Smit, FP Santos
Proc. of the Adaptive and Learning Agents Workshop (ALA 2023)
e-link
Fairness in Transport Network Design-A Multi-Objective Reinforcement Learning Approach
D Michailidis, W Röpke, S Ghebreab, DM Roijers, FP Santos
Proc. of the Adaptive and Learning Agents Workshop (ALA 2023)
e-link
The Impact of a Crisis Event on Predicting Social Media Virality
E de Groot, RG Pillai, FP Santos
International Workshop on Complex Networks, 95-107
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The Effect of Link Recommendation Algorithms on Network Centrality Disparities
T Debono, FP Santos
International Workshop on Complex Networks, 74-85
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| 2022 | back to top |
Voluntary safety pledges overcome over-regulation dilemma in AI development: an evolutionary game analysis
TA Han, FC Santos, LM Pereira, T Lenaerts
ALIFE 2022: The 2022 Conference on Artificial Life
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Network Diversity Promotes Safety Adoption in Swift Artificial Intelligence Development
T Cimpeanu, FC Santos, LM Pereira, T Lenaerts, TA Han
ALIFE 2022: The 2022 Conference on Artificial Life
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LINES: multimodal transportation resilience analysis
JT Aparicio, E Arsenio, FC Santos, R Henriques
Sustainability 14 (13), 7891
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Delegation to artificial agents fosters prosocial behaviors in the collective risk dilemma
EF Domingos, I Terrucha, R Suchon, J Grujić, JC Burguillo, FC Santos, TLenaerts
Nature Scientific Reports 12 (1), 8492
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Combining wildfire behaviour simulations and network analysis to support wildfire management: A Mediterranean landscape case study
BA Aparício, JMC Pereira, FC Santos, C Bruni, ACL Sá
Ecological Indicators 137, 108726
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Artificial intelligence development races in heterogeneous settings
T Cimpeanu, FC Santos, LM Pereira, T Lenaerts, TA Han
Nature Scientific Reports 12 (1), 1723
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Cooperation dynamics under pandemic risks and heterogeneous economic interdependence
M Chica, JM Hernández, FC Santos
Chaos, Solitons & Fractals 155, 111655
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Voluntary safety commitments provide an escape from over-regulation in AI development
TA Han, T Lenaerts, FC Santos, LM Pereira
Technology in Society 68, 101843
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Learning Collective Action under Risk Diversity
R Merhej, FP Santos, FS Melo, M Chetouani, FC Santos
arXiv preprint arXiv:2201.12891
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Cooperation and Learning Dynamics under Wealth Inequality and Diversity in Individual Risk
R Merhej, FP Santos, FS Melo, FC Santos
Journal of Artificial Intelligence Research 74, 733-764
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Can Algorithms be Explained Without Compromising Efficiency? The Benefits of Detection and Imitation in Strategic Classification
F Barsotti, RG Koçer, FP Santos
Proceedings of AAMAS 2022
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Cooperation and learning dynamics under risk diversity and financial incentives
R Merhej, FP Santos, FS Melo, M Chetouani, FC Santos
Proceedings of AAMAS 2022
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Special issue on adaptive and learning agents 2020
FL da Silva, P MacAlpine, R Rădulescu, FP Santos, P Mannion
Neural Computing and Applications 34 (3), 1649-1651
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End-to-End Bias Mitigation in Candidate Recommender Systems with Fairness Gates
AM Arafan, D Graus, FP Santos, E Beauxis-Aussalet
RecSys in HR’22: The 2nd Workshop on Recommender Systems for Human Resources
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Transparency, Detection and Imitation in Strategic Classification
F Barsotti, RG Koçer, FP Santos
Proceedings of the IJCAI 2021
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| 2021 | back to top |
Financial incentives to poor countries promote net emissions reductions in multilateral climate agreements
Y Dong, S Ma, B Zhang, WX Wang, JM Pacheco
One Earth 4 (8), 1141-1149
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Multistage feedback-driven compartmental dynamics of hematopoiesis
NVM Père, T Lenaerts, JM dos Santos Pacheco, D Dingli
IScience 24 (4)
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A Regulation Dilemma in Artificial Intelligence Development
TA Han, FC Santos, LM Pereira, T Lenaerts
ALIFE 2021: The 2021 Conference on Artificial Life
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Risk sensitivity and theory of mind in human coordination
PL Ferreira, FC Santos, S Pequito
PLoS Computational Biology 17 (7), e1009167
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Exploring empathy in cyberbullying with serious games
PC Ferreira, AMV Simão, A Paiva, C Martinho, R Prada, A Ferreira, FC Santos
Computers & Education 166, 104155
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Modeling behavioral experiments on uncertainty and cooperation with population-based reinforcement learning
EF Domingos, J Grujić, JC Burguillo, FC Santos, T Lenaerts
Simulation Modelling Practice and Theory 109, 102299
e-link
Modeling behavioral experiments on uncertainty and cooperation with population-based reinforcement learning–Extended Abstract
EF Domingos, J Grujić, JC Burguillo, FC Santos, T Lenaerts
NERCCS 2021: Fourth Northeast Regional Conference on Complex Systems, 80
e-link
Emotion expressions shape human social norms and reputations
CM de Melo, K Terada, FC Santos
Iscience 24 (3)
e-link
Stable leaders pave the way for cooperation under time-dependent exploration rates
FL Pinheiro, JM Pacheco, FC Santos
Royal Society Open Science 8 (2), 200910
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Mediating artificial intelligence developments through negative and positive incentives
TA Han, LM Pereira, T Lenaerts, FC Santos
PLoS one 16 (1), e0244592
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Heterogeneous Interactions in Artificial Intelligence Development Races
T Cimpeanu, FC Santos, L Moniz Pereira, T Lenaerts
Nature Scientific Reports 12 (2022) 1723
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Time-scale Differences will Influence the Regulation Required in an Idealised AI Race Game
TA Han, L Moniz Pereira, FC Santos, T Lenaerts
Proceedings of IJCAI 2019
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Modelling and regulating safety compliance: Game theory lessons from AI development races analyses
TA Han, LM Pereira, FC Santos, T Lenaerts
AISafety workshop, IJCAI 2019
e-link
Timing uncertainty in collective risk dilemmas encourages group reciprocation and polarization
EF Domingos, J Grujić, JC Burguillo, G Kirchsteiger, FC Santos, T Lenaerts
iScience 23 (12), 101752
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Link recommendation algorithms and dynamics of polarization in online social networks
FP Santos, Y Lelkes, SA Levin
Proceedings of the National Academy of Sciences 118 (50), e2102141118
e-link
The complexity of human cooperation under indirect reciprocity
FP Santos, JM Pacheco, FC Santos
Philosophical Transactions of the Royal Society B 376 (1838), 20200291
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Evolutionary games in cities and urban planning
S Encarnação, FP Santos, FC Santos, M Pereira, JM Pacheco, J Portugali
Handbook on Cities and Complexity
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Empathy and Prosociality in Social Agents
A Paiva, F Correia, R Oliveira, FC Santos, P Arriaga
The Handbook on Socially Interactive Agents: 20 years of Research on on Embodied Conversational Agents,
Intelligent Virtual Agents, and Social Robotics Volume 2: Interactivity, Platforms, Application
e-link
Social Network Interventions to Prevent Reciprocity-driven Polarization
FP Santos, FC Santos, JM Pacheco, SA Levin
Proceedings of AAMAS 2020
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Cooperation between Independent Reinforcement Learners under Wealth Inequality and Collective Risks
R Merhej, FP Santos, FS Melo, FC Santos
Proceedings of AAMAS 2020
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Biased perceptions explain collective action deadlocks and suggest new mechanisms to prompt cooperation
FP Santos, SA Levin, VV Vasconcelos
iScience 24 (4), 102375
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Evolution of collective fairness in complex networks through degree-based role assignment
AS Teixeira, FC Santos, AP Francisco, FP Santos
arXiv preprint arXiv:2102.13597
e-link
Eliciting Fairness in N‐Player Network Games through Degree‐Based Role Assignment
AS Teixeira, FC Santos, AP Francisco, FP Santos
Complexity 2021 (1), 6851477
e-link
Dynamics of informal risk sharing in collective index insurance
FP Santos, JM Pacheco, FC Santos, SA Levin
Nature Sustainability, 1-7
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Towards prosocial design: A scoping review of the use of robots and virtual agents to trigger prosocial behaviour
R Oliveira, P Arriaga, FP Santos, S Mascarenhas, A Paiva
Computers in Human Behavior 114, 106547
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| 2020 | back to top |
Coalition-structured governance improves cooperation to provide public goods
VV Vasconcelos, PM Hannam, SA Levin, JM Pacheco
Nature Nature Scientific Reports 10 (1), 9194
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AI Development Race Can Be Mediated on Heterogeneous Networks
T Cimpeanu, FC Santos, LM Pereira, T Lenaerts, The Anh Han
arXiv preprint arXiv:2012.15234
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Signalling boosts the evolution of cooperation in repeated group interactions
LA Martinez-Vaquero, FC Santos, V Trianni
Journal of the Royal Society Interface 17 (172), 20200635
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To Regulate or Not: A Social Dynamics Analysis of an Idealised AI Race
TA Han, LM Pereira, FC Santos, T Lenaerts
Journal of Artificial Intelligence Research 69, 881-921
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Governance of risky public goods under graduated punishment
MC Couto, JM Pacheco, FC Santos
Journal of Theoretical Biology 505, 110423
e-link
Navigating the landscape of multiplayer games
S Omidshafiei, K Tuyls, WM Czarnecki, FC Santos, M Rowland, J Connor, D Hennes, P Muller, J Pérolat, B De Vylder, A Gruslys, R Munos
Nature communications 11 (1), 5603
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Adoption dynamics and societal impact of ai systems in complex networks
PM Fernandes, FC Santos, M Lopes
Proceedings of the AAAI/ACM Conference on AI, Ethics, and Society, 258-264
e-link
A Population Dynamics Approach to Viral Marketing
PC Souto, LV Silva, DC Pinto, FC Santos
Complex Networks and Their Applications VIII (2019)
e-link
Timing Uncertainty Encourages Group Reciprocation and Polarisation in Collective Risk Dilemmas
E Fernández Domingos, J Grujic, JC Burguillo, G Kirchsteiger, FC Santos, T Lenaerts
IScience 23, 12 (2020) 101752
e-link
Coordinating human and agents in a collective-risk dilemma
E Fernandez Domingos, I Terrucha, J Grujić, R Suchon, JC Burguillo, G Kirchsteiger, FC Santos, T Lenaerts
Proceedings of AAAI 2017
e-link
Emergence of Cooperation in N-Person Dilemmas through Actor-Critic Reinforcement Learning
JV Barbosa, AHR Costa, FS Melo, JS Sichman, FC Santos
Adaptive Learning Agents (ALA'20) Workshop, AAMAS 2019
e-link
Norms for beneficial AI: A computational analysis of the societal value alignment problem
PM Fernandes, FC Santos, M Lopes
AI Communications 33 (3-6), 155-171
e-link
Picky losers and carefree winners prevail in collective risk dilemmas with partner selection
FP Santos, S Mascarenhas, FC Santos, F Correia, S Gomes, A Paiva
Autonomous Agents and Multi-Agent Systems 34 (2), 40
e-link
Changes in group size during resource shifts reveal drivers of sociality across the tree of life
AB Kao, AK Hund, FP Santos, JG Young, D Bhat, J Garland, RA Oomen, RA Oomen, HF McCreery
bioRxiv, 2020.03. 17.994343
e-link
| 2019 | back to top |
Evolutionary Game Dynamics and Cancer
JM Pacheco, SA Levin, D Dingli
Trends in Cancer
e-link
Walk the Talk! Exploring (Mis) Alignment of Words and Deeds by Robotic Teammates in a Public Goods Game
F Correia, S Chandra, S Mascarenhas, J Charles-Nicolas, J Gally, D Lopes, FP Santos, FC Santos, A Paiva
28th IEEE International Conference on Robot and Human Interactive Communication
e-link
Promoting Cooperation through External Interference
L Tran-Thanh, S Lynch, TI Cimpeanu, FC Santos
Proceedings of the 2019 Conference on Artificial Life
e-link
Exogenous rewards for promoting cooperation in scale-free networks
T Cimpeanu, TA Han, FC Santos
Artificial life conference proceedings, 316-323
e-link
A mathematical look at empathy
N Masuda, FC Santos
Elife 8, e47036
e-link
Counterfactual Thinking in Cooperation Dynamics
FC Santos, L Pereira
Studies in Applied Philosophy, Epistemology and Rational Ethics (SAPERE,volume 49)
e-link
Human reciprocation and polarization in managing of uncertain public goods
E Fernandez Domingos, J Grujić, JC Burguillo, G Kirchsteiger, FC Santos, T Lenaerts
ALIFE19: Computational Approaches to Social Dynamics - Data, Modeling, Simulation, and Hybrids (Workshop)
e-link
Counterfactual thinking in cooperation dynamics
LM Pereira, FC Santos
Model-Based Reasoning in Science and Technology Inferential Models for Logic, Language, Cognition and Computation
e-link
Capturing financial volatility through simple network measures
PC Souto, AS Teixeira, AP Francisco, FC Santos
Complex Networks 2018
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Reward and punishment in climate change dilemmas
AR Góis, FP Santos, JM Pacheco, FC Santos
Nature Scientific Reports 9 (1), 16193
e-link
Walk the Talk! Exploring (Mis) Alignment of Words and Deeds by Robotic Teammates in a Public Goods Game
F Correia, S Chandra, S Mascarenhas, J Charles-Nicolas, J Gally, D Lopes, FP Santos, FC Santos, A Paiva
2019 28th IEEE International Conference on Robot and Human Interactive Communication
e-link
Evolution of collective fairness in hybrid populations of humans and agents
FP Santos, JM Pacheco, A Paiva, FC Santos
Proceedings of the AAAI Conference on Artificial Intelligence 33, 6146-6153
e-link
Outcome-based Partner Selection in Collective Risk Dilemmas
FP Santos, SF Mascarenhas, FC Santos, F Correia, S Gomes, A Paiva
Proceedings of AAMAS 2018
e-link
For The Record-A Public Goods Game For Exploring Human-Robot Collaboration
F Correia, S Mascarenhas, S Gomes, S Tulli, FP Santos, FC Santos, R Prada, FS Melo, A Paiva
Proceedings of AAMAS 2019
e-link
Moderate Responder Committees Maximize Fairness in (NxM)-Person Ultimatum Games
D Bloembergen, FP Santos
AAMAS 2019 Workshop on Adaptive and Learning Agents (ALA)
e-link
Teoria de Jogos Evolutiva e Cooperação
S Encarnação, FP Santos, FC Santos, J Portugali, JM Pacheco, M Pereira
26th APDR Congress. Evidence-based territorial policymaking: Formulation, Implementation and Evaluation of Policy
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Fairness in Multiplayer Ultimatum Games Through Moderate Responder Selection
FP Santos, D Bloembergen
Proceedings of ALIFE 2019
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| 2018 | back to top |
Structural and temporal patterns of the first global trading market
AS Ribeiro, FL Pinheiro, FC Santos, A Polónia, JM Pacheco
Royal Society Open Science 5 (8), 180577
e-link
Large-scale simulations of bacterial populations over complex networks
AS Teixeira, PT Monteiro, JA Carriço, FC Santos, AP Francisco
Journal of Computational Biology 25 (8), 850-861
e-link
Fostering Cooperation in Structured Populations Through Local and Global Interference Strategies
TA Han, S Lynch, L Tranh-Thanh, FC Santos
Proc. of the ECAI & IJCAI
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Paths to the adoption of electric vehicles: An evolutionary game theoretical approach
S Encarnação, FP Santos, FC Santos, V Blass, JM Pacheco, J Portugali
Transportation Research Part B: Methodological 113, 24-33
e-link
Multiplayer Ultimatum Games and Collective Fairness in Networked Communities.
FP Santos, JM Pacheco, A Paiva, FC Santos
ALIFE, 286-287
e-link
Human cooperation and the complexity of moral codes
FP Santos, JM Pacheco, FC Santos
Artificial Life Conference Proceedings, 614-615
e-link
Social norm complexity and past reputations in the evolution of cooperation
FP Santos, FC Santos, JM Pacheco
Nature 555 (7695), 242-245
e-link
Ecological implications of thermal stress and larval connectivity in the Coral Triangle
LC McManus, VV Vasconcelos, FP Santos, S Levin, DM Thompson, ...
2018 Ocean Sciences Meeting
e-link
Fairness in multiplayer ultimatum games through degree-based role assignment
AS Teixeira, FC Santos, AP Francisco, FP Santos
International Conference on Complex Networks and their Applications, 218-220
e-link
Engineering Pro-sociality with Autonomous Agents
A Paiva, FP Santos, FC Santos
Thirty-Second AAAI Conference on Artificial Intelligence, AAAI-18, 7994-7999
e-link
Indirect Reciprocity and Costly Assessment in Multiagent Systems
FP Santos, JM Pacheco, FC Santos
Thirty-Second AAAI Conference on Artificial Intelligence, AAAI-2018, 8149-8150
e-link
Social norms of cooperation with costly reputation building
FP Santos, JM Pacheco, FC Santos
Thirty-Second AAAI Conference on Artificial Intelligence, AAAI-2018, 4727-4734
e-link
Local Wealth Redistribution Promotes Cooperation in Multiagent Systems
FL Pinheiro, FP Santos
Proceedings of AAMAS 2017
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| 2017 | back to top |
Disease spreading in time-evolving networked communities
Jorge M. Pacheco, Sven Van Segbroeck and Francisco
C. Santos
in N. Masuda and P. Holme (eds.), Temporal Network Epidemiology, Theoretical Biology, pp 291-316, Springer Nature (2017).
e-link
Environmental Impacts of Colonial Dynamics, 1400–1800: The First Global Age and the Anthropocene
Amélia Polónia and Jorge M. Pacheco,
In: Economic Development and Environmental History in the
Anthropocene: Perspectives on Asia and Africa, pp. 23-49, 2017, Bloomsbury.
e-link
Structural power and the evolution of collective fairness in social networks
Fernando P. Santos, Jorge M. Pacheco, Ana Paiva and Francisco
C. Santos
PLoS One 12 (4): e0175687 (2017).
e-link
Stochastic dynamics through hierarchically embedded Markov chains
Vítor V. Vasconcelos, Fernando P. Santos, Francisco C. Santos, and
Jorge M. Pacheco
Physical Review Letters 118, 058301 (2017).
e-link
Incomplete cooperation and co-benefits: deepening climate cooperation with a proliferation of small agreements
Phillip M. Hannam, Vítor V. Vasconcelos, Simon A. Levin, and Jorge
M. Pacheco
Climatic Change Vol. 144 (1), pp. 65–79 (2017).
e-link
Using Spark and MapReduce to Parallelize Large Scale Simulations Over Host Contact Networks
Andreia Sofia Teixeira, Pedro T. Monteiro, João Carriço, Francisco C. Santos, and Alexandre P. Francisco
In Ibrahim S., Choo KK., Yan Z., Pedrycz W. (eds). Proc. of the 17th International Conference on Algorithms and Architectures for Parallel Processing (ICA3PP 2017)
Lecture Notes in Computer Science, vol 10393. pp. 591-600, 2017, Springer.
e-link
Indirect reciprocity in populations of explorative agents
Fernando P. Santos, Jorge M. Pacheco, and Francisco
C. Santos
in Workshop Adaptive Learning Agents (ALA'17) at AAMAS 2017, 2017.
e-link
Emergence of social balance in signed networks
Andreia Sofia Teixeira, Francisco C. Santos, and Alexandre P. Francisco
in Goncalves B., Menezes R., Sinatra R., Zlatic V. (eds) Proc. of the 8th Workshop on Complex Networks VIII, CompleNet 2017, Springer Proceedings in Complexity, pp 185-192, Springer, 2017.
e-link
| 2016 | back to top |
Paradigm shifts and the interplay between state, business and civil sectors
Sara Encarnação, Fernando P. Santos, Francisco C. Santos, Vered Blass, Jorge M. Pacheco, Juval Portugali
Royal Society Open Science 3 (2016) 160753
e-link
About the discrete-continuous nature of a hematopoiesis model for Chronic Myeloid Leukemia
Marcos Gaudiano, Tom Lenaerts, and Jorge M. Pacheco
Mathematical biosciences Vol. 282, pp. 174-80 (2016).
e-link
Evolution of cooperation under indirect reciprocity and arbitrary exploration rates
Fernando P. Santos, Jorge M. Pacheco, Francisco C. Santos
Scientific Reports 6 (2016) 37517
e-link
An evolutionary game theoretic approach to multi-sector coordination and self-organization
Fernando P. Santos, Sara Encarnação, Francisco C. Santos, Jorge M. Pacheco
Entropy 18,2 (2016) 152
e-link
Linking Individual and Collective Behavior in Adaptive Social Networks
Flávio L. Pinheiro, Francisco C. Santos, Jorge M. Pacheco
Physical Review Letters 116 (2016) 128702
abstract
Social Norms of Cooperation in Small-Scale Societies
Fernando P. Santos, Francisco C. Santos, Jorge M. Pacheco
PLoS Computational Biology 12 (2016) e1004709378
e-link
Evolutionary dynamics of collective index insurance
Jorge M. Pacheco, Francisco C. Santos, Simon A. Levin
Journal of Mathematical Biology 72 (2016) 997-1010
abstract
Execution Errors Enable the Evolution of Fairness in the Ultimatum Game
Fernando P. Santos, Francisco C. Santos, Ana Paiva, and Jorge M. Pacheco
in Proceedings of the 22st European Conference on Artificial Intelligence (ECAI2016), extended abstract,
1592-1593
e-link
The Role of Execution Errors in Populations of Ultimatum Bargaining Agents
Fernando P. Santos, Francisco C. Santos, Ana Paiva, and Jorge M. Pacheco
in 2nd Workshop on Conflict Resolution in Decision Making (COREDEMA 2016), Satellite Workshop at the 22st European Conference on Artificial Intelligence (ECAI2016), Amsterdam, 2016.
e-link
Evolution of Fairness in Multiplayer Ultimatum Games
Fernando P. Santos, Francisco C. Santos, Ana Paiva, and Jorge M. Pacheco
in 1st Workshop on Multidisciplinary Applications of Evolutionary Game Theory, Satellite Workshop at ALife XV, 15th International Conference on the Synthesis and Simulation of Living Systems (ALIFE XV), Mexico, July 2016.
e-link
Cooperation and Reputation in Primitive Societies
Fernando P. Santos, Francisco C. Santos, and Jorge M. Pacheco
in Proceedings of 15th International Conference on the Synthesis and Simulation of Living Systems (ALIFE XV), MIT press, July,2016.
e-link
Multiplayer ultimatum game in populations of autonomous agents
Fernando P. Santos, Francisco C. Santos, Francisco S. Melo, Ana Paiva, Jorge M. Pacheco
Adaptive and Learning Agents Workshop (ALA 2016), Int. Conf. Autonomous Agents and Multiagent Systems (AAMAS 2016), (Best paper award of ALA 2016).
e-link
Spanning Edge Betweenness in Practice
Andreia Sofia Teixeira, Francisco C. Santos, and Alexandre P. Francisco
in Complex Networks VII, Proc. of the 7th Workshop on Complex Networks (CompleNet 2016), Series Studies in Computational Intelligence, Vol. 644, pp. 3-10, Springer-Verlag, 2016.
e-link
Learning to be Fair in Multiplayer Ultimatum Games
Fernando P. Santos, Francisco C. Santos, Francisco S. Melo, Ana Paiva, and Jorge M. Pacheco
in Proceedings of the 2016 International Conference on Autonomous Agents and Multiagent Systems (AAMAS 2016), IFAAMAS, 2016.
e-link
Modeling the socio-ecological dynamics of the first global age (1400-1800)
Amelia Polonia, Francisco C. Santos, Jorge M. Pacheco
in Proc. of the International Conference Old and New Worlds: the Global Challenges of Rural History, XV Congreso de Historia Agraria de la SEHA, Hosted by ISCTE, Lisbon, Portugal (Jan, 2016).
e-link
| 2015 | back to top |
Incomplete cooperation and co-benefits: deepening climate cooperation with a proliferation of small agreements
Phillip M. Hannam, Vítor V. Vasconcelos, Simon A. Levin, Jorge M. Pacheco
Climatic Change (2015) doi 10.1007/s10584-015-1511-2
abstract
Evolutionary dynamics of group fairness
Fernando P. Santos, Francisco C. Santos, Ana Paiva, Jorge M. Pacheco
Journal of Theoretical Biology 378 (2015) 96-102
abstract
Cooperation Dynamics of Polycentric Climate Governance
Vítor V. Vasconcelos, Francisco C. Santos and Jorge M. Pacheco
Mathematical Models and Methods in Applied Sciences (M3AS) 25 (2015) 2503
abstract
Synergy between intention recognition and commitments in cooperation dilemmas
The Anh Han, Francisco C. Santos, Tom Lenaerts and Luís Moniz Pereira
Scientific Reports 5 (2015) 9312
e-link
Co-evolutionary Dynamics of Collective Action with Signaling for a Quorum
Jorge M. Pacheco, Vítor V. Vasconcelos, Francisco C. Santos, Brian Skyrms
PLoS Computational Biology 11 (2) (2015) e1004101
e-link
Emergence of Cooperation via Intention Recognition, Commitment, and Apology - A Research Summary
The Anh Han, Luís Moniz Pereira, Francisco C. Santos, and Tom Lenaerts
AI Communications 28(4) (2015) 709-715
e-link
The Universality of Peer-Influence in Social Networks
Flavio L. Pinheiro, Marta D. Santos, Francisco C. Santos, and Jorge M. Pacheco
Proceedings of the European Conference on Artificial Life 378 ECAL 2015, Andrews, et al. (eds), pp. 149, MIT Press, 2015.
e-link
Evolutionary perks of being irrational
Fernando P. Santos, Francisco C. Santos and Ana Paiva
Proceedings of the 2015 International Conference on Autonomous Agents and Multiagent Systems (AAMAS 2015), pp. 1847, IFAAMAS, 2015.
e-link
Teoria de Jogos Evolutiva na Modelação da Cooperação entre os Sectores Público, Privado e Civil
Sara A. Encarnação, Fernando Santos, Francisco C. Santos, Jorge M. Pacheco, and Juval Portugali
in Proc. X Congresso da Geografia Portuguesa - Os Valores da Geografia , UNL-FCSH, Lisbon, Sept (2015).
e-link
Evolution of Pairwise Commitment and Cooperation
The Anh Han, Luís Moniz Pereira, Francisco C. Santos and Tom Lenaerts
Proceedings of the European Conference on Complex Systems 2014 (ECCS'14) (extended abstract).
e-link
Learning to Recognize Intentions Resolves Cooperation Dilemmas
The Anh Han, Luís Moniz Pereira, Tom Lenaerts and Francisco C. Santos
Proceedings of the 23rd annual Belgian-Dutch Conference on Machine Learning (BENELEARN 2014), Brussels, Belgium (extended abstract).
Complex Systems of Mindful Entities: on Intention Recognition and Commitment
Luís Moniz Pereira, The Anh Han and Francisco C. Santos
Book chapter in Model-Based Reasoning in Science and Technology, Series in Studies in Applied Philosophy, Epistemology and Rational Ethics, 8 (2014) 499-525
e-link
Evolution of Fairness and Conditional Cooperation in Public Goods Dilemmas
Sven Van Segbroeck, Jorge M. Pacheco, Tom Lenaerts and Francisco C. Santos
in the Proceedings of the European Conference on Complex Systems 2012 Springer Proceedings in Complexity (2014) 827-830
e-link
| 2014, 5 publications | back to top |
Evolution of All-or-None strategies in repeated public goods dilemmas
Flávio L. Pinheiro, Vítor V. Vasconcelos, Francisco C. Santos, Jorge M. Pacheco
PLoS Computational Biology 11 (2) (2014) e1003945
e-link
The ecology of cancer from an evolutionary game theory perspective
Jorge M. Pacheco, Francisco C. Santos, David Dingli
Interface focus 4 (2014) 20140019
e-link
The Origin of peer influence in social networks
Flávio L. Pinheiro, Marta D. Santos, Francisco C. Santos and Jorge M. Pacheco
Physical Review Letters 112, 9 (2014) 098702
abstract
Climate Change Governance, Cooperation and Self-organization
Jorge M. Pacheco, Vítor V. Vasconcelos and Francisco C. Santos
Physics of Life Review Physics of Life Reviews 11, 4 (2014) 573-586
Climate policies under wealth inequality
Vítor V. Vasconcelos, Francisco C. Santos, Jorge M. Pacheco and Simon A. Levin
Proceedings of the National Academy of Sciences (USA) 111 (6) (2014) 2212-2216
(doi:10.1073/pnas.1323479111)
e-link
| 2013, 9 publications | back to top |
A bottom-up institutional approach to cooperative governance of risky commons
Vítor V. Vasconcelos, Francisco C. Santos and Jorge M. Pacheco
Nature Climate Change 3 (2013) 797-801
e-link News&Views
Urban Dynamics, Fractals and Generalized Entropy
Sara Encarnação, Marcos Gaudiano, Francisco C. Santos, José A. Tenedório, Jorge M. Pacheco
Entropy 15 (2013) 2679-2697
e-link
Evolution of collective action in adaptive social structuress
João Moreira, Jorge M. Pacheco and Francisco C. Santos
Scientific Reports 3 (2013) 1521
e-link
Reward from Punishment Does Not Emerge at All Costs
Jeromos Vukov, Flávio L. Pinheiro, Francisco C. Santos and Jorge M. Pacheco
PLoS Computational Biology 9(1) (2013) e1002868
e-link
On the dynamics of neutral mutations in a mathematical model for a homogeneous stem cell population
Arne Traulsen, Tom Lenaerts, Jorge M. Pacheco and David Dingli
Journal of the Royal Society Interface 10, 79 (2013) 20120810
e-link
Individual memory and the emergence of cooperation
João Moreira, Jeromos Vukov, Cláudia Sousa, Francisco C Santos, André F. Almeida, Marta D Santos, Jorge M. Pacheco
Animal Behaviour 85 (1) (2013) 233-239
Behavioral dynamics under climate change dilemmas
Francisco C. Santos and Jorge M. Pacheco
book chapter in New Challenges to Philosophy of Science, The Philosophy of Science in a European Perspective Series (Volume 4) , edited by Hanne Andersen, Dennis Dieks, Wenceslao J. Gonzalez, Marcel Weber, Gregory Wheeler, (2013) 113-124, Springer
Self-organized game dynamics in complex networks
Flávio L. Pinheiro, Vítor V. Vasconcelos, Francisco C. Santos and Jorge M. Pacheco
in Advances in Artificial Life, ECAL 2013: Proceedings of the 12th European Conference on the Synthesis and Simulation of Living Systems, MIT Press, 2013
Bootstrapping back the climate with self-organization
Vítor V. Vasconcelos, Flávio L. Pinheiro,Francisco C. Santos and Jorge M. Pacheco
in Advances in Artificial Life, ECAL 2013: Proceedings of the 12th European Conference on the Synthesis and Simulation of Living Systems, MIT Press, 2013
| 2012, 16 publications | back to top |
Dynamics of N-Person Snowdrift Games in Structured Populations
Marta D. Santos, Flávio L. Pinheiro, Francisco C. Santos and Jorge M. Pacheco
Journal of Theoretical Biology 315 (2012) 81-86
Science Direct
Fractal cartography of urban areas
Sara Encarnação, Marcos Gaudiano, Francisco C. Santos, José Tenedório and Jorge M. Pacheco
Nature Scientific Reports, 2 (2012) 527
e-link
How selection pressure changes the nature of social dilemmas in structured populations
Flávio L. Pinheiro, Francisco C. Santos and Jorge M. Pacheco
New Journal of Physics, 14 (2012) 073035
e-link
Cognitive strategies take advantage of the cooperative potential of heterogeneous networks
Jeromos Vukov, Francisco C. Santos and Jorge M. Pacheco
New Journal of Physics, 14 (2012) 063031
e-link
Emergence of Fairness in Repeated Group Interactions
Sven Van Segbroeck, Jorge M. Pacheco Tom Leanerts and Francisco C. Santos
Physical Review Letters 108 (2012) 158104
e-link pdf
Corpus-based Intention Recognition in Cooperation Dilemmas
Han The Anh, Luís Moniz Pereira and Francisco C. Santos
Artificial Life, 18-4 (2012) 365-383
e-link
From Local to Global Dilemmas in Social Networks
Flávio L. Pinheiro, Jorge M. Pacheco and Francisco C. Santos
PLoS ONE 7(2) (2012) e32114
e-link pdf
Evolutionary dynamics of climate change under collective-risk dilemmas
Francisco C. Santos, Vitor Vasconcelos, Marta D. Santos, Pedro Neves and Jorge M. Pacheco
Mathematical Models and Methods in Applied Sciences Vol. 22, Supp. Issue (1) (2012) 1140004
The Role of Diversity in the Evolution of Cooperation
Francisco C. Santos, Flávio L. Pinheiro, T. Lenaerts and Jorge M. Pacheco
Journal of Theoretical Biology, 299 (2012) 88-96
e-link
Evolutionary dynamics of collective action when individual fitness derives from group decisions taken in the past
João A. Moreira, Flávio L. Pinheiro, Ana Nunes and Jorge M. Pacheco
Journal of Theoretical Biology 298 (2012) 8–15
e-link preprint
Tracking the evolution of cooperation in complex networked populations
Flávio L. Pinheiro, Francisco C. Santos and Jorge M. Pacheco
Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (EvoBio 2012), Lecture Notes in Computer Science Volume 7246/2012 (2012) 86-96 by Springer Berlin/Heidelberg
e-link
Intention recognition, commitment and the evolution of cooperation
Han The Anh, Luís Moniz Pereira and Francisco C. Santos
forthcoming in 2012 IEEE World Congress on Computational Intelligence (IEEE WCCI 2012), Congress on Evolutionary Computation (IEEE CEC 2012), June 10-15, Brisbane, Australia
The emergence of commitments and cooperation
Han The Anh, Luís Moniz Pereira and Francisco C. Santos
in Proceedings of the 11th International Conference on Autonomous Agents and Multiagent Systems (AAMAS 2012), Conitzer, Winikoff, Padgham, and van der Hoek (eds.), pp. 559-566, IFAAMAS (2012)
Evolving the asymmetry of the Prisoner's dilemma game in adaptive social structures
Joao Moreira, Jorge M. Pacheco, Francisco C. Santos
in Bio-Inspired Models of Network, Information and Computing Systems (BIONETICS 2010), Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering 87 (2012) 205-212
Evolutionary Dynamics of Cooperation Under the Distributed Prisoner's Dilemma
Flavio L. Pinheiro, Francisco C. Santos, Jorge M. Pacheco
in Bio-Inspired Models of Network, Information and Computing Systems (BIONETICS 2010), Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering 87 (2012) 523-532
Collective Evolutionary Dynamics and Spatial Reciprocity under the N-Person Snowdrift Game
Marta D. Santos, Francisco C. Santos, Jorge M. Pacheco
in Bio-Inspired Models of Network, Information and Computing Systems (BIONETICS 2010), Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering 87 (2012) 178-188
| 2011, 21 publications | back to top |
Dynamics of mutant cells in hierarchical organized tissues
Benjamin Werner, David Dingli, Tom Lenaerts, Jorge M. Pacheco, Arne Traulsen
PLoS-Computational Biology 7(12) (2011) e1002290
e-link
Evolutionary Dynamics of Mutations in Hematopoietic Stem Cells and Beyond
David Dingli, Arne Traulsen and Jorge M. Pacheco
Stem Cells and Cancer Stem Cells, 3(11) (2011) 115-123
Escaping the tragedy of the commons via directed investments
Jeromos Vukov, Francisco C. Santos and Jorge M. Pacheco
Journal of Theoretical Biology 287 (2011) 37-41
e-link
Risk of collective failure provides an escape from the tragedy of the commons
Francisco C. Santos and Jorge M. Pacheco
Proceedings of the National Academy of Sciences (USA) 108 (26) (2011) 10421-10425
pre-print abstract
Stochastic dynamics and the evolution of mutations in stem cells
David Dingli & Jorge M. Pacheco
BMC Biology 9:41 (2011)
e-link
Explaining the in vivo and in vitro differences in leukemia therapy
T. Lenaerts, F. Castagnetti, A. Traulsen, J.M. Pacheco, G. Rosti and D. Dingli
Cell Cycle 10 (2011) 1540-1544
abstract
Incipient Cognition Solves the Spatial Reciprocity Conundrum of Cooperationn
Jeromos Vukov, Francisco C. Santos, Jorge M. Pacheco
PLoS One 6(3) (2011) e17939
abstract pdf supporting information
Co-evolution of pre-play signaling and cooperation
Francisco C. Santos, Jorge M. Pacheco and Brian Skyrms
Journal of Theoretical Biology 274 (1) (2011) 30-35
Abstract PDF
Selection pressure transforms the nature of social dilemmas in adaptive networks
Sven Van Segbroeck, Francisco C. Santos, Tom Lenaerts and Jorge M. Pacheco
New Journal of Physics 13 (2011) 013007
Abstract PDF
The messianic effect of pathological altruism
Jorge M. Pacheco and Francisco C. Santos
Pathological Altruism, Oxford University Press, USA (1st edition, July 25, 2011)
Edited by Barbara Oakley, Ariel Knafo, Guruprasad Madhavan and David Sloan Wilson.
reviews cover OUP Amazon.com New York Times
Evolutionary dynamics of collective action
Jorge M. Pacheco, Francisco C. Santos,Max O. Souza, Brian Skyrms
in The Mathematics of Darwin's Legacy, series on Mathematics and Biosciences in Interaction, Chalub and Rodrigues (eds), p.119, Birkhauser Basel (1st Edition., 2011, Hardcover, ISBN: 978-3-0348-0121-8).
pdf
Modelling Hematopoiesis in Health and Disease
Diogo Peixoto, David Dingli, Jorge M. Pacheco
Mathematical and Computer Modelling Volume 53, Issues 7-8, (2011) 1546-1557
Evolutionary Dynamics of Cooperation in Multiplayer Games
João Moreira
Msc. Thesis at the University of Lisbon
supervised by Jorge M. Pacheco and co-supervision of Francisco C. Santos
The impact of diversity on the emergence of cooperation
Flávo L. Pinheiro
Msc. Thesis at the University of Lisbon
supervised by Jorge M. Pacheco and co-supervision of Francisco C. Santos
Ab-initio Design of Bulk Materials Assembled With Silicon Clusters
Carlos L. Reis
PhD. Thesis at the University of Lisbon
supervised by Jorge M. Pacheco
Evolutionary dynamics of collective action
Jorge M. Pacheco, Francisco C. Santos,Max O. Souza, Brian Skyrms
in Advances in Artificial Life, ECAL 2011: Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems , T. Lenaerts, M. Giacobini, H. Bersini, P. Bourgine, M. Dorigo and R. Doursat, eds. MIT Press, 2011
Co-evolution of pre-play signaling and cooperation
Francisco C. Santos, Jorge M. Pacheco and Brian Skyrms
in Advances in Artificial Life, ECAL 2011: Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems , T. Lenaerts, M. Giacobini, H. Bersini, P. Bourgine, M. Dorigo and R. Doursat, eds. MIT Press, 2011
Intention Recognition Promotes The Emergence of Cooperation
Han The Anh, Luís Moniz Pereira, Francisco C. Santos
Adaptive Behavior 19 (4) 264-279 (2011)
The role of intention recognition in the evolution of cooperative behavior
Han The Anh, Luís Moniz Pereira, Francisco C. Santos
Proceedings of the 22nd International Joint Conference on Artificial Intelligence, July 2011, Barcelona, Spain (IJCAI 2011), pp. 1684-1689, AAAI / MIT press.
Emergence of cooperation in adaptive social networks with behavioral diversity
Sven Van Segbroeck, Francisco C. Santos, Tom Lenaerts and Jorge M. Pacheco
in Proceedings of the 10th European Conference on Artifical Life, ECAL 2009, Budapest, Hungary Kampis, G.; Karsai, I.; Szathmary, E. (Eds.).
Advances in Artificial Life: Darwin Meets von Neumann, Lecture Notes in Computer Science,, vol. 5777, pp.434-441, Springer-Verlag, Berlin, Germany, 2011
To grip or not to grip? Evolving role allocation and internal conflict in autonomous robots
Christos Ampatzis, Francisco C. Santos, Vito Trianni and Elio Tuci
in Proceedings of the 10th European Conference on Artifical Life, ECAL 2009, Budapest, Hungary Kampis, G.; Karsai, I.; Szathmary, E. (Eds.).
Advances in Artificial Life: Darwin Meets von Neumann, Lecture Notes in Computer Science,, vol. 5777, pp.434-441, Springer-Verlag, Berlin, Germany, 2011
| 2010, 18 publications | back to top |
Mechanisms Supporting Cooperation for the Evolutionary Prisoner's Dilemma Games
György Szabó, Attila Szolnoki and Jeromos Vukov
in Econophysics and Economics of Games, Social Choices and Quantitative Techniques, New Economic Windows Springer (2010), Part I, 24-31, DOI: 10.1007/978-88-470-1501-2_4
e-link
Coordinating towards a Common Good
Francisco C. Santos, Jorge M Pacheco
AIP Conf. Proc 1281 (2010) 1540
e-link
Vibrational spectra of silicon cage clusters doped with Ti, Zr, or Hf
Carlos L. Reis, Jorge M Pacheco
Physical Review B 82 (2010) 155440
pdf e-link
Somatic mutations and the hierarchy of hematopoiesis
Arne Traulsen, Jorge M. Pacheco, Lucio Luzzatto, David Dingli
BioEssays 32(11) (2010) 1003-8
Creating metamaterials at the nano-scale
Jorge M. Pacheco, Carlos L. Reis
Actas da Academia de Ciências de Lisboa (2010) in press
Minimizing CO2 Emissions in a Computing World
Carlos L. Reis, Jorge M. Pacheco
Fifth International Conference on Software Engineering Advances (ICSEA), 2010, pages 395 - 399 (DOI:10.1109/ICSEA.2010.67)
Sistemas Territoriais Complexos – da não linearidade das dinâmicas territoriais à emergência de territórios auto-organizados
Sara A. Encarnacao, Sergio Serafim, Marcos Gaudiano, Francisco C. Santos, Jorge M. Pacheco and Jose A. Tenedorio
Proceedings of the XII Coloquio Iberico de Geografia (2010).
Co-evolution of cooperation, response to adverse social ties and network structure
Sven Van Segbroeck, Francisco C. Santos, Jorge M. Pacheco and Tom Lenaerts
Games 1:3 (2010) 317-337
abstract pdf
Adaptive contact networks change effective disease infectiousness and dynamics
Sven Van Segbroeck, Francisco C. Santos and Jorge M. Pacheco
PLoS Computational Biology 6:8 (2010) e1000895
abstract pdf supporting information Press Coverage
Learning to coordinate in complex networks
Sven Van Segbroeck,Steven de Jong, Ann Nowe, Francisco C. Santos and Tom Lenaerts
Adaptive Behavior 18:5 (2010) 416-427
abstract pdf
Hierarchically constrained dynamics and emergence of complex behaviour in nano-hybrids
Luís D. Carlos, Jorge M. Pacheco, Rute A. S. Ferreira, António L. L. Videira
SMALL 6 (2010) 386-390
Tyrosine kinase inhibitor therapy can cure chronic myeloid leukemia without hitting leukemic stem cells
Tom Lenaerts, Jorge M. Pacheco, Arne Traulsen, David Dingli
Haematologica 95 (2010) 900-907
In silico evolutionary dynamics of tumor virotherapy
Carlos L. Reis, Jorge M. Pacheco, Matthews K. Ennis, David Dingli
Integrative Biology (2010) 41-45
abstract html article press coverage
Emergence of collective action under coordination dilemmas
Francisco C. Santos, Brian Skyrms, Max O. Souza and Jorge M. Pacheco forthcoming in Proceedings of the European Conference on Complex Systems 2010
Coordinating towards a common good
Jorge M. Pacheco, Francisco C. Santos,Max O. Souza, Brian Skyrms
Book Chapter in Dynamics and Games in Science, in Honour of Mauricio Peixoto and David Rand, DYNA2008, Springer-Verlag, (2010, in press)
Evolutionary Dynamics of Chronic Myeloid Leukemia
David Dingli, Arne Traulsen, Tom Lenaerts, Jorge M. Pacheco
Genes and Cancer 1, 4 (2010) 309-315
Modeling the architecture and dynamics of hematopoiesis
David Dingli, Jorge M. Pacheco
Wiley Intedisciplinary Reviews : Systems Biology (2010) 2(2):235-44
Hematopoietic stem cells and their dynamics
David Dingli, Arne Traulsen, Jorge M. Pacheco
in "Stem Cells: Basics and Applications" K. D. Deb and S. M. Totey (Edts) (McGraw-Hill, New Delhi, 2010) in press
Reproductive fitness advantage of BCR–ABL expressing leukemia cells
Arne Traulsen, Jorge M. Pacheco, David Dingli
Cancer Letters 1;294(1) (2010) 43–48
Bulk materials made of silicon cage clusters doped with Ti, Zr, or Hf
Carlos L. Reis, J. M. Pacheco
in J. Physics Condensed Matter 22 (2010) 035501
pdf e-link
| 2009, 19 publications | back to top |
Cyclic neutropenia in animals
Jorge M. Pacheco, Arne Traulsen, Tibor Antal, David Dingli
American Journal of Hematology 84 (2009) 258
Social diversity favors the emergence of cooperative behavior
Francisco C. Santos, Marta D. Santos, Sven Van Segbroeck and Jorge M. Pacheco
Proceedings of the Benelux Conference on Artificial Intelligence (2009)
Behavioral differences and the evolution of cooperation in adaptive social networks
S. Van Segbroeck, Francisco C. Santos, Tom Lenaerts and Jorge M. Pacheco
Proceedings of the Benelux Conference on Artificial Intelligence (2009)
Evolution of Cooperation in Adaptive Social Networks
S. Van Segbroeck, Francisco C. Santos, Arne Traulsen, Tom Lenaerts, Jorge M. Pacheco
in Handbook on Biological Networks World Scientific Publishing Company, Singapore 2009 Edited by S. Boccaletti, V. Latora, and Y. Moreno
Reply: Evolutionary game theory: lessons and limitations, a cancer perspective
D. Dingli, F. A. C. C. Chalub, F. C. Santos, S. Van Segbroeck, J. M. Pacheco
British Journal of Cancer 101, (2009) 2062-2063
Population structure induces a symmetry breaking favoring the emergence of cooperation
Jorge M. Pacheco, Flávio L. Pinheiro, Francisco C. Santos
PLoS Computational Biology 5(12) (2009) e1000596
pdf
Cancer phenotype as the outcome of an evolutionary game between normal and malignant cells
D. Dingli, F.A.C.C. Chalub, F. C. Santos, S. Van Segbroeck, J. M. Pacheco
British Journal of Cancer 101 (2009) 1130-1136
pdf
Selection of noise level in strategy adoption for spatial social dilemmas
Attila Szolnoki, Jeromos Vukov, Gyorgy Szabó
Phys Rev E 80 (2009) 056112
pdf
The evolution of cooperation under n-person snowdrift games
Max O. Souza, Jorge M. Pacheco, Francisco C. Santos
Journal of Theoretical Biology 260 (4) (2009) 581-588
pdf
The allometry of chronic myeloid leukemia
Jorge M. Pacheco, Arne Traulsen, David Dingli
Journal of Theoretical Biology 259 (2009) 635-640
pdf
Progenitor Cell Self-renewal and Cyclic Neutropenia
David Dingli, Arne Traulsen, Jorge M. Pacheco
Cell Proliferation 42 (2009) 330–33
pdf e-link
Emergence of cooperation in adaptive social networks with behavioral diversity
Sven Van Segbroeck, Francisco C. Santos, Tom Lenaerts and Jorge M. Pacheco
in Proceedings of the 10th European Conference on Artifical Life, 2009 Lecture Notes in Computer Science, Springer (accepted)
Evolutionary dynamics of collective action in N-person stag hunt dilemmas
Jorge M. Pacheco, Francisco C. Santos, Max O. Souza, Brian Skyrms
Proceedings Royal Society B 276 1655 (2009) (Online 25-Sept-2008)
pdf e-link
Reacting differently to adverse ties promotes cooperation in social networks
Sven Van Segbroeck, Francisco C. Santos, Tom Lenaerts, Jorge M. Pacheco
Physical Review Letters 102, 058105 (2009) Selected for the Virtual Journal of Biological Physics Research 17:4 (2009)
pdf press
The coevolution of loyalty and cooperation
Sven Van Segbroeck, Francisco C. Santos, Ann Nowé, Jorge M. Pacheco, Tom Lenaerts
in Proceedings of the IEEE Congress on Evolutionary Computation 2009, Trondheim (2009)
Evolution of cooperation in adaptive social networks.
Sven Van Segbroeck, Francisco C. Santos, Arne Traulsen, Tom Lenaerts and Jorge M. Pacheco
in "Handbook on Biological Networks" S. Boccaletti, V. Latora, and Y. Moreno (Edts.) World Scientific Publishing Company, Singapore (2009)
Evolutionary games in self-organizing populations
Arne Traulsen, Francisco C. Santos, Jorge M. Pacheco
"Adaptive Networks: Theory, Models and Applications"
Thilo Gross & Hiroki Sayama (Edts.)
New England Complex Systems Institute Book Series on Complexity
(Springer N.Y., 2009)
pdf e-link
| 2008, 11 publications | back to top |
Neutral evolution in paroxysmal nocturnal hemoglobinuria
David Dingli, Lucio Luzzatto, Jorge M. Pacheco
Proceedings of the National Academy of Sciences (USA) 105 (2008) 18496
pdf e-link
Successful Cancer Treatment: Eradication of Cancer Stem Cells
David Dingli, Jorge M. Pacheco
in "Methods of Cancer Diagnosis, Therapy and Prognosis", Vol. 2, 179-191
M. A. Hayat (Editor)
Springer Netherlands (2008)
pdf e-link
The evolution of prompt reaction to adverse ties
Sven Van Segbroeck, Francisco C. Santos, Ann Nowé, Jorge M. Pacheco, Tom Lenaerts
BMC Evolutionary Biology 8 (2008) 287
e-link
Cyclic neutropenia in mammals
Jorge M. Pacheco, Arne Traulsen, Tibor Antal, David Dingli
American Journal of Hematology 83 (2008) 920
pdf e-link
Social diversity promotes the emergence of cooperation in public goods games
Francisco C. Santos, Marta D. Santos, Jorge M. Pacheco
Nature 454 (2008) 213-216
pdf e-link press
Dynamics of haemopoiesis across mammals
David Dingli, Arne Traulsen, Jorge M. Pacheco
Proc Biol Sci. 275(1649) (2008) 2389–2392
pdf e-link press
Chronic Myeloid Leukemia: Origin, Development, Response To Therapy, And Relapse
David Dingli, Arne Traulsen, Jorge M. Pacheco
Clinical Leukemia 2 (2008) 133-139
pdf e-link
Multiple mutant clones in blood rarely coexist
David Dingli, Jorge M. Pacheco, Arne Traulsen
Physical Review E 77(2008) 021915
pdf e-link
Some dynamic aspects of hematopoietic stem-cells
David Dingli, Jorge M. Pacheco
Stem Cell Reviews 4(1) (2008) 57-64
pdf e-link
Repeated games and direct reciprocity under active linking
Jorge M. Pacheco, Arne Traulse, Hisashi Ohtsuki, Martin A. Nowak
Journal of Theoretical Biology 250 (2008) 723
pdf e-link
Social Odometry in Populations of Autonomous Robots
Álvaro Gutiérrez, Alexandre Campo, Francisco C. Santos, Carlo Pinciroli and Marco Dorigo
Lecture Notes in Computer Science 5217 (2008) 371-378, Springer
abstract pdf
| 2007, 25 publications | back to top |
Stability analysis of a bulk material built from silicon cage clusters: A first principles approach
Carlos L. Reis, José Luís Martins, J. M. Pacheco
in Physics Review B 76 (2007) 233406
pdf e-link
Acquired hematopoietic stem cell disorders and mammalian size
J. Viana Lopes, Jorge M. Pacheco, David Dingli
Blood 110 (2007) 4120-4122.
pdf e-link
On the origin of multiple mutant clones in paroxysmal nocturnal hemoglobinuria
Arne Traulsen, J. M. Pacheco, David Dingli
Stem Cells 25 (2007) 3081-3084
pdf e-link
A Multi-Level Selection Model for the Emergence of Social Norms
Francisco C. Santos, Fabio A. C. C. Chalub, Jorge M. Pacheco
Lecture Notes in Computer Science 4648 (2007) 525-534
pdf e-link
Depth of response and outcome in multiple myeloma
David Dingli, J. M. Pacheco, Grzegorz S. Nowakowski, Shaji Kumar, Angela Dispenzieri, Suzanne Hayman, Martha Lacy, Dennis Gastineau, Morie Gertz
Journal of Clinical Oncology 25 (2007) 4933-4937
pdf e-link
Ontogenic growth of the haematopoietic stem cell pool in humans
David Dingli, J. M. Pacheco
Proceedings Royal Society B274 (2007) 2479
pdf e-link
Single versus multiple transplants for multiple myeloma: Insights from in vivo and in silicostudies
David Dingli, J. M. Pacheco, M. A. Gertz
Blood 108 (2006) 458
e-link
The serum M-spike and transplant outcome in patients with multiple myeloma
David Dingli, J. M. Pacheco, Angela Dispenzieri, Suzanne Hayman, Shaji Kumar, Martha Lacy, Dennis Gastineau, Morie Gertz
Blood 108 (2006) 455
e-link
From stem cells to blood: dynamic and architectural aspects of hematopoiesis
David Dingli, A. Traulsen, J. M. Pacheco
Haematologica 92 (2007) 454
e-link
The size of the human active hematopoietic stem cell pool from birth to adulthood
David Dingli, J. M. Pacheco
Haematologica 92 (2007) 369
e-link
Impact of stochastic dynamics on the active hematopoietic stem cell pool
David Dingli, A. Traulsen, J. M. Pacheco
Haematologica 92 (2007) 161
e-link
Evolution of norms in a multi-level selection model of conflict and cooperation
Jorge M. Pacheco, Francisco C. Santos, Chalub, F. A. C. C.
Electronic Journal of Theoretical Physics 4 16 (2) (2007) 157-172
The serum M-spike and transplant outcome in patients with multiple myeloma
David Dingli, J. M. Pacheco, Angela Dispenzieri, Suzanne Hayman, Shaji Kumar, Martha Lacy, Dennis Gastineau, Morie Gertz
Cancer Science 98 (7) (2007) 1035–1040
pdf e-link
Evolutionary Graph Theory: Breaking the symmetry between interaction and replacement
Hisashi Ohtsuki, J. M. Pacheco, Martin A. Nowak
Journal of Theoretical Biology 246 (4) (2007) 681-694
pdf e-link
Breaking the symmetry between interaction and replacement in evolutionary dynamics on graphs
Hisashi Ohtsuki, Martin A. Nowak, J. M. Pacheco
Physical Review Letters 98 (2007) 108106
Selected for the Virtual Journal of Biological Physics Research 13, 6 (2007) March 15th
pdf e-link
Compartmental Architecture and Dynamics of Hematopoiesis (open access)
David Dingli, Arne Traulsen, J. M. Pacheco
PLoS ONE 2(4) (2007) e345
e-link
In vivo and in silico studies on single versus multiple transplants for multiple myeloma
David Dingli, J. M. Pacheco, Angela Dispenzieri, Suzanne Hayman, Shaji Kumar, Martha Lacy, Dennis Gastineau, Morie Gertz
Cancer Science 98 (5) (2007) 734–739
pdf e-link
Stochastic dynamics of hematopoietic tumor stem cells
David Dingli, Arne Traulsen, J. M. Pacheco
Cell Cycle 6 (4) (2007) 461-466
pdf e-link issue cover
Pairwise Comparison and selection temperature in evolutionary game dynamics
Arne Traulsen, Martin A. Nowak, J. M. Pacheco
Journal of Theoretical Biology 246 ( 2007) 522-529
pdf e-link
The Emergence of Tumor Metastases
David Dingli, Franziska Michor, Tibor Antal, J. M. Pacheco
Cancer Biology & Therapy 6,3 (2007) 522-529
pdf e-link
Evolution of cooperation in a population of selfish adaptive agents
Jorge M. Pacheco, Tom Lenaerts, Francisco C. Santos
Lecture Notes in Computer Science 4648 (2007) 535-544
pdf e-link
Types, instances and high-level constraints in growing networks
Hugues Bersini, Francisco C. Santos, Tom Lenaerts
In Proc. of the European Conference on Complex Systems 2007, Dresden 2007.
(ECCS'07).
Cooperation prevails when individuals adjust their social ties
Francisco C. Santos, Jorge M. Pacheco and Tom Lenaerts
In Proc. of the European Conference on Complex Systems 2007, Dresden 2007.
(ECCS'07).
How Affinity Influences Tolerance in an Idiotypic Network
Emma Hart, Hugues Bersini and Francisco C. Santos
Journal of Theoretical Biology 249 (2007) 422-436.
Networks regulating networks: The effects of constraints on topological evolution
Francisco C. Santos, Hugues Bersini and Tom Lenaerts
Lecture Notes in Computer Science 4648 (2007), 956-965, Springer.
| 2006, 19 publications | back to top |
Silicon-metal clusters: nano-templates for cluster assembled materials
G. K. Gueorguiev, J. M. Pacheco, S. Stafström
in Thin Solid Films 515 (2006) 1192-1196
pdf e-link
Stern-judging : A simple, successful norm which promotes cooperation under indirect reciprocity (open access)
J. M. Pacheco, F. C. Santos, Fabio A. C. C. Chalub
PLoS Computational Biology 2(12) (2006) e178
e-link
Coevolution of strategy and structure in complex networks with dynamical linking
J. M. Pacheco, Arne Traulsen, Martin A. Nowak
Physical Review Letters 97 (2006) 258103
Selected for the Virtual Journal of Biological Physics Research 13, 1 (2007) January 1st
pdf e-link
Cooperation Prevails when individuals adjust their social ties (open access)
F. C. Santos, J. M. Pacheco, Tom Lenaerts
PLoS Computational Biology 2(10) (2006) 1284
e-link
Allometric scaling of the hematopoietic stem cell pool accross mammals (open access)
David Dingli, J. M. Pacheco
PLoS ONE 1 (2006) e2
e-link
Stochastic payoff evaluation increases the temperature of selection
Arne Traulsen, Martin A. Nowak, J. M. Pacheco
Journal of Theoretical Biology 244 (2006) 349-356
pdf e-link
Emergence of Cooperation in Heterogeneous Structured Populations
F. C. Santos, J. M. Pacheco, Tom Lenaerts
Proceedings of the 10th Conference on the Simulation and Synthesis of Living Systems
(L. M. Rocha et al., Edts.) MIT Press (2006) 432-437
pdf e-link
Active linking in evolutionary games
J. M. Pacheco, Arne Traulsen, Martin A. Nowak
Journal of Theoretical Biology 243 (2006) 437-443
pdf e-link
Stochasticicy and Evolutionary Stability
Arne Traulsen, J. M. Pacheco, Lorens Imhof
Physical Review E 74 (2006) 021905
Selected for the Virtual Journal of Biological Physics Research 12, 4 (2006) August 15th
pdf e-link
Stochastic dynamics of invasion and fixation
Arne Traulsen, Martin A. Nowak, J. M. Pacheco
Physical Review E 74 (2006) 011909
Selected for the Virtual Journal of Biological Physics Research 12, 3 (2006) August 1st
pdf e-link
Evolutionary Dynamics of Social Dilemmas in Structured Heterogeneous Populations (open access)
Francisco C. Santos, J. M. Pacheco, Tom Lenaerts
Proceedings of the National Academy of Sciences, USA103 (2006) 3490-3494 (Online 16-Feb-2006)
e-link press
The Evolution of Norms
Fabio A. C. C. Chalub, Francisco C. Santos, J. M. Pacheco
Journal of Theoretical Biology 241(2) (2006) 233-240 (Online 04-Jan-2006)
pdf e-link
A new route to the evolution of cooperation
Francisco C. Santos, J. M. Pacheco
Journal of Evolutionary Biology 19(3) (2006) 726-733
pdf e-link
Tolerance vs Intolerance: How Affinity Defines Topology in an Idiotypic Network
Emma Hart, Hugues Bersini and Francisco C. Santos
Lecture Notes in Computer Science 4163 (2006) 109-121, Springer.
PDF
Games on graphs.
Francisco C. Santos
MSc Thesis, (co-supervised by J. M. Pacheco) Université Libre de Bruxelles, TR/IRIDIA/2006-24.
How scale-free type-based networks emerge from instance-based dynamics
Tom Lenaerts, Hugues Bersini and Francisco C. Santos
Proceedings of the 10th International Conference on the Simulation and Synthesis of Living Systems (Alife X), (Rocha et al.,Editors), p.8-15, MIT Press (2006)
Growing Biological networks:Beyond the gene-duplication model
Hugues Bersini, Tom Lenaerts and Francisco C. Santos
Journal of Theoretical Biology 241 (3) (2006) (Online 25-Jan-2006).
pdf
Epidemics spreading and cooperation dynamics on homogeneous small-world networks
Francisco C. Santos, João F. Rodrigues, J. M. Pacheco
Physical Review E 72 (2005) 056128
Selected for the Virtual Journal of Biological Physics Research 10 (2005) December 1st
pdf e-link
Graph topology plays a determinant role in the evolution of cooperation
Francisco C. Santos, João F. Rodrigues, J. M. Pacheco
Proc. Royal Soc. London B273 (2006) 51-55 (online October 2005)
pdf e-link
| 2005, 4 publications | back to top |
Scale-Free networks provide a unifying framework for the Emergence of Cooperation
Francisco C. Santos, J. M. Pacheco
Physical Review Letters 95 (2005) 098104
Selected for the Virtual Journal of Biological Physics Research 10 (2005) September 1st
pdf e-link
Network dependence of the dilemmas of cooperation
J. M. Pacheco, Francisco C. Santos
Science of Complex Networks: from Biology to the Internet and WWW
AIP Conference Proceedings 776 (2005) pp 90-100 (J. F. F. Mendes, Editor)
pdf
Recurrent epidemics in small world networks
J. Verdasca, M. M. Telo da Gama, A. Nunes, N. R. Bernardino, J. M. Pacheco, M. C. Gomes
Journal of Theoretical Biology 233 (2005) 553-561
pdf e-link
Growing Biochemical Networks: Identifying the Intrinsic Properties
Hugues Bersini, Tom Lenaerts and Francisco C. Santos
Lecture Notes in Artificial Intelligence 3630 : 864-873(2005) Springer